Calculating prediction accuracy of a tree using rpart's predict method
decision-tree, machine-learning, r, rpart
Solution
Try calculating the confusion matrix first:
confMat <- table(test$class,t_pred)
Now you can calculate the accuracy by dividing the sum diagonal of the matrix - which are the correct predictions - by the total sum of the matrix:
accuracy <- sum(diag(confMat))/sum(confMat)
Problem
I have constructed a decision tree using rpart for a dataset. I have then divided the data into 2 parts - a training dataset and a test dataset. A tree has been constructed for the dataset using the training data. I want to calculate the accuracy of the predictions based on the model that was created. My code is shown below: ``` library(rpart) #reading the data data = read.table("source") names(data) <- c("a", "b", "c", "d", "class") #generating test and train data - Data selected randomly with a 80/20 split trainIndex <- sample(1:nrow(x), 0.8 * nrow(x)) train <- data[trainIndex,] test <- data[-trainIndex,] #tree construction based on information gain tree = rpart(class ~ a + b + c + d, data = train, method = 'class', parms = list(split = "information")) ``` I now want to calculate the accuracy of the predictions generated by the model by comparing the results with the actual values train and test data however I am facing an error while doing so. My code is shown below: ``` t_pred = predict(tree,test,type="class") t = test['class'] accuracy = sum(t_pred == t)/length(t) print(accuracy) ``` I get an error message that states - Error in t_pred == t : comparison of these types is not implemented In addition: Warning message: Incompatible methods ("Ops.factor", "Ops.data.frame") for "==" On checking the type of t_pred, I found out that it is of type integer however the documentation (https://stat.ethz.ch/R-manual/R-devel/library/rpart/html/predict.rpart.html) states that the `predict()` method must return a vector. I am unable to understand why is the type of the variable is an integer and not a list. Where have I made the mistake and how can I fix it?