ggplot2 2.1.0 broke my code? Secondary transformed axis now appears incorrectly
ggplot2, gtable, r
Solution
Updated to ggplot2 v 2.2.1, but it is easier to use `sec.axis` - see here
Original
Moving axes in `ggplot2` became more complex from version 2.1.0. This solution draws on code from older solutions and from code in the `cowplot` package.
With respect to your second issue, it was easier to construct a separate text grob for the "Stuff" title (rather than dealing with `ggtitle` with its margins).
library(ggplot2) #v 2.2.1
library(gtable) #v 0.2.0
library(grid)
LakeLevels <- data.frame(Day = c(1:365), Elevation = sin(seq(0, 2*pi, 2 * pi/364)) * 10 + 100)
## 'base' plot
p1 <- ggplot(data = LakeLevels) +
geom_path(aes(x = Elevation, y = Day)) +
scale_x_continuous(name = "Elevation (m)", limits = c(75, 125)) +
theme_bw()
## plot with "transformed" axis
p2 <- ggplot(data = LakeLevels) +
geom_path(aes(x = Elevation, y = Day))+
scale_x_continuous(name = "Elevation (ft)", limits = c(75, 125),
breaks = c(80, 90, 100, 110, 120),
labels = round(c(80, 90, 100, 110, 120) * 3.28084)) + ## labels convert to feet
theme_bw()
## Get gtable
g1 <- ggplotGrob(p1)
g2 <- ggplotGrob(p2)
## Get the position of the plot panel in g1
pp <- c(subset(g1$layout, name == "panel", se = t:r))
# Title grobs have margins.
# The margins need to be swapped.
# Function to swap margins -
# taken from the cowplot package:
# https://github.com/wilkelab/cowplot/blob/master/R/switch_axis.R
vinvert_title_grob <- function(grob) {
heights <- grob$heights
grob$heights[1] <- heights[3]
grob$heights[3] <- heights[1]
grob$vp[[1]]$layout$heights[1] <- heights[3]
grob$vp[[1]]$layout$heights[3] <- heights[1]
grob$children[[1]]$hjust <- 1 - grob$children[[1]]$hjust
grob$children[[1]]$vjust <- 1 - grob$children[[1]]$vjust
grob$children[[1]]$y <- unit(1, "npc") - grob$children[[1]]$y
grob
}
# Copy "Elevation (ft)" xlab from g2 and swap margins
index <- which(g2$layout$name == "xlab-b")
xlab <- g2$grobs[[index]]
xlab <- vinvert_title_grob(xlab)
# Put xlab at the top of g1
g1 <- gtable_add_rows(g1, g2$heights[g2$layout[index, ]$t], pp$t-1)
g1 <- gtable_add_grob(g1, xlab, pp$t, pp$l, pp$t, pp$r, clip = "off", name="topxlab")
# Get "feet" axis (axis line, tick marks and tick mark labels) from g2
index <- which(g2$layout$name == "axis-b")
xaxis <- g2$grobs[[index]]
# Move the axis line to the bottom (Not needed in your example)
xaxis$children[[1]]$y <- unit.c(unit(0, "npc"), unit(0, "npc"))
# Swap axis ticks and tick mark labels
ticks <- xaxis$children[[2]]
ticks$heights <- rev(ticks$heights)
ticks$grobs <- rev(ticks$grobs)
# Move tick marks
ticks$grobs[[2]]$y <- ticks$grobs[[2]]$y - unit(1, "npc") + unit(3, "pt")
# Sswap tick mark labels' margins
ticks$grobs[[1]] <- vinvert_title_grob(ticks$grobs[[1]])
# Put ticks and tick mark labels back into xaxis
xaxis$children[[2]] <- ticks
# Add axis to top of g1
g1 <- gtable_add_rows(g1, g2$heights[g2$layout[index, ]$t], pp$t)
g1 <- gtable_add_grob(g1, xaxis, pp$t+1, pp$l, pp$t+1, pp$r, clip = "off", name = "axis-t")
# Add "Stuff" title
titleGrob = textGrob("Stuff", x = 0.9, y = 0.95, gp = gpar(cex = 1.5, fontface = "bold"))
g1 <- gtable_add_grob(g1, titleGrob, pp$t+2, pp$l, pp$t+2, pp$r, name = "Title")
# Draw it
grid.newpage()
grid.draw(g1)
Problem
Some time ago, I inquired about adding a secondary transformed x-axis in ggplot, and Nate Pope provided the excellent solution described at ggplot2: Adding secondary transformed x-axis on top of plot. That solution worked great for me, and I returned to it hoping it would work for a new project. Unfortunately, the solution doesn't work correctly in the most recent version of ggplot2. Now, running the exact same code leads to a "clipping" of the axis title, as well as overlap of the tick marks and labels. Here is an example, with the problems highlighted in blue: This example can be reproduced with the following code (this is an exact copy of Nate Pope's code that previously worked marvelously): ``` library(ggplot2) library(gtable) library(grid) LakeLevels<-data.frame(Day=c(1:365),Elevation=sin(seq(0,2*pi,2*pi/364))*10+100) ## 'base' plot p1 <- ggplot(data=LakeLevels) + geom_line(aes(x=Elevation,y=Day)) + scale_x_continuous(name="Elevation (m)",limits=c(75,125)) + ggtitle("stuff") + theme(legend.position="none", plot.title=element_text(hjust=0.94, margin = margin(t = 20, b = -20))) ## plot with "transformed" axis p2<-ggplot(data=LakeLevels)+geom_line(aes(x=Elevation, y=Day))+ scale_x_continuous(name="Elevation (ft)", limits=c(75,125), breaks=c(90,101,120), labels=round(c(90,101,120)*3.24084) ## labels convert to feet ) ## extract gtable g1 <- ggplot_gtable(ggplot_build(p1)) g2 <- ggplot_gtable(ggplot_build(p2)) ## overlap the panel of the 2nd plot on that of the 1st plot pp <- c(subset(g1$layout, name=="panel", se=t:r)) g <- gtable_add_grob(g1, g2$grobs[[which(g2$layout$name=="panel")]], pp$t, pp$l, pp$b, pp$l) g <- gtable_add_grob(g1, g1$grobs[[which(g1$layout$name=="panel")]], pp$t, pp$l, pp$b, pp$l) ## steal axis from second plot and modify ia <- which(g2$layout$name == "axis-b") ga <- g2$grobs[[ia]] ax <- ga$children[[2]] ## switch position of ticks and labels ax$heights <- rev(ax$heights) ax$grobs <- rev(ax$grobs) ax$grobs[[2]]$y <- ax$grobs[[2]]$y - unit(1, "npc") + unit(0.15, "cm") ## modify existing row to be tall enough for axis g$heights[[2]] <- g$heights[g2$layout[ia,]$t] ## add new axis g <- gtable_add_grob(g, ax, 2, 4, 2, 4) ## add new row for upper axis label g <- gtable_add_rows(g, g2$heights[1], 1) g <- gtable_add_grob(g, g2$grob[[6]], 2, 4, 2, 4) # draw it grid.draw(g) ``` Running the above code leads to two critical problems, which I am trying to resolve: 1) How to adjust the x-axis added to the top of the plot to fix the "clipping" and overlap issues? 2) How to include the `ggtitle("stuff")` added to the first plot `p1` in the final plot? I've been trying to resolve these problems all afternoon, but cannot seem to solve them. Any help is much appreciated. Thanks!