Using knit2pdf with Rmd files
knitr, r, r-markdown
Solution
Your input file is in `rmarkdown` format.
You should use the `render()` function in the `rmarkdown` package to compile your document.
Try:
library("rmarkdown")
render("temp.rmd")
Problem
Is it possible to use the knitr function knit2pdf() directly with R Markdown (Rmd) files? I've seen various tutorials/class notes that seem to suggest it can e.g. here and here (Ctrl+F "knit2pdf" in either). But when I take a simple rmd file (saved as "test.rmd") ```` --- title: "knit2pdf test" author: "A Aaronson" date: "Thursday, February 19, 2015" output: pdf_document --- This is an R Markdown document. Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents. For more details on using R Markdown see <http://rmarkdown.rstudio.com>. When you click the **Knit** button a document will be generated that includes both content as well as the output of any embedded R code chunks within the document. You can embed an R code chunk like this: ```{r} summary(cars) ``` You can also embed plots, for example: ```{r, echo=FALSE} plot(cars) ``` Note that the `echo = FALSE` parameter was added to the code chunk to prevent printing of the R code that generated the plot. ```` and try ``` library(knitr) knit2pdf("test.Rmd") ``` I get the following error results in: ``` output file: test.md Error: running 'texi2dvi' on 'test.md' failed LaTeX errors: ! Emergency stop *** (job aborted, no legal \end found) ! ==> Fatal error occurred, no output PDF file produced! ! ==> Fatal error occurred, no output PDF file produced! In addition: Warning message: running command '"C:\PROGRA~2\MIKTEX~1.9\miktex\bin\texi2dvi.exe" --quiet --pdf "test.md" --max-iterations=20 -I "C:/PROGRA~1/R/R-31~1.2/share/texmf/tex/latex" -I "C:/PROGRA~1/R/R-31~1.2/share/texmf/bibtex/bst"' had status 1 ``` Clicking the "Knit PDF" button always successfully generates a pdf. So am I missing an intermediate step? I should add that knit2pdf() with Rnw files is working as expected for me, though I do still get the warning ``` running command '"C:\PROGRA~2\MIKTEX~1.9\miktex\bin\texi2dvi.exe" --quiet --pdf "rnwtest.tex" --max-iterations=20 -I "C:/PROGRA~1/R/R-31~1.2/share/texmf/tex/latex" -I "C:/PROGRA~1/R/R-31~1.2/share/texmf/bibtex/bst"' had status 1 ``` Help greatly appreciated.