Neo4j WARNING: Max 1024 open files allowed, minimum of 40 000 recommended. See the Neo4j manual

I installed Neo4j on Ubuntu 12.04 using these instructions: http://www.neo4j.org/download/linux ``` wget -O - http://debian.neo4j.org/neotechnology.gpg.key | apt-key add - echo 'deb http://debian.neo4j.org/repo stable/' > /etc/apt/sources.list.d/neo4j.list apt-get update apt-get install neo4j ``` I made sure to have the right jdk: ``` root@precise64:~# java -version java version "1.7.0_45" Java(TM) SE Runtime Environment (build 1.7.0_45-b18) Java HotSpot(TM) 64-Bit Server VM (build 24.45-b08, mixed mode) ``` And when I startup neo4j I get this error: WARNING: Max 1024 open files allowed, minimum of 40 000 recommended. See the Neo4j manual. So I follow the instructions here: http://docs.neo4j.org/chunked/1.6.2/configuration-linux-notes.html And add these contents to `/etc/security/limits.conf` ``` neo4j soft nofile 40000 neo4j hard nofile 40000 ``` And uncomment this line in `/etc/pam.d/su` ``` session required pam_limits.so ``` After I restart the server I validate the new limit ``` neo4j@precise64:~$ ulimit -n 40000 ``` Then I restart my server. I still get the same error when starting up. ``` root@precise64:~# service neo4j-service start WARNING: Max 1024 open files allowed, minimum of 40 000 recommended. See the Neo4j manual. Using additional JVM arguments: -server -XX:+DisableExplicitGC -Dorg.neo4j.server.properties=conf/neo4j-server.properties -Djava.util.logging.config.file=conf/logging.properties -Dlog4j.configuration=file:conf/log4j.properties -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled Starting Neo4j Server...WARNING: not changing user process [3161]... waiting for server to be ready....... OK. http://localhost:7474/ is ready. ``` Even though the service is running as the neo4j user: ``` root@precise64:~# ps -ef | grep 3161 neo4j 3161 1 2 17:43 pts/0 00:00:10 /usr/bin/java -cp /var/lib/neo4j/lib/concurrentlinkedhashmap-lru-1.3.1.jar:/var/lib/neo4j/lib/geronimo-jta_1.1_spec-1.1.1.jar:/var/lib/neo4j/lib/lucene-core-3.6.2.jar:/var/lib/neo4j/lib/neo4j-cypher-2.0.0.jar:/var/lib/neo4j/lib/neo4j-cypher-commons-2.0.0.jar:/var/lib/neo4j/lib/neo4j-cypher-compiler-1.9-2.0.0.jar:/var/lib/neo4j/lib/neo4j-cypher-compiler-2.0-2.0.0.jar:/var/lib/neo4j/lib/neo4j-graph-algo-2.0.0.jar:/var/lib/neo4j/lib/neo4j-graph-matching-2.0.0.jar:/var/lib/neo4j/lib/neo4j-jmx-2.0.0.jar:/var/lib/neo4j/lib/neo4j-kernel-2.0.0.jar:/var/lib/neo4j/lib/neo4j-lucene-index-2.0.0.jar:/var/lib/neo4j/lib/neo4j-shell-2.0.0.jar:/var/lib/neo4j/lib/neo4j-udc-2.0.0.jar:/var/lib/neo4j/lib/org.apache.servicemix.bundles.jline-0.9.94_1.jar:/var/lib/neo4j/lib/parboiled-core-1.1.6.jar:/var/lib/neo4j/lib/parboiled-scala_2.10-1.1.6.jar:/var/lib/neo4j/lib/scala-library-2.10.3.jar:/var/lib/neo4j/lib/server-api-2.0.0.jar:/var/lib/neo4j/system/lib/asm-3.1.jar:/var/lib/neo4j/system/lib/bcprov-jdk16-140.jar:/var/lib/neo4j/system/lib/commons-beanutils-1.8.0.jar:/var/lib/neo4j/system/lib/commons-beanutils-core-1.8.0.jar:/var/lib/neo4j/system/lib/commons-collections-3.2.1.jar:/var/lib/neo4j/system/lib/commons-compiler-2.6.1.jar:/var/lib/neo4j/system/lib/commons-configuration-1.6.jar:/var/lib/neo4j/system/lib/commons-digester-1.8.1.jar:/var/lib/neo4j/system/lib/commons-io-1.4.jar:/var/lib/neo4j/system/lib/commons-lang-2.4.jar:/var/lib/neo4j/system/lib/commons-logging-1.1.1.jar:/var/lib/neo4j/system/lib/jackson-core-asl-1.9.7.jar:/var/lib/neo4j/system/lib/jackson-jaxrs-1.9.7.jar:/var/lib/neo4j/system/lib/jackson-mapper-asl-1.9.7.jar:/var/lib/neo4j/system/lib/janino-2.6.1.jar:/var/lib/neo4j/system/lib/javax.servlet-3.0.0.v201112011016.jar:/var/lib/neo4j/system/lib/jcl-over-slf4j-1.6.1.jar:/var/lib/neo4j/system/lib/jersey-core-1.9.jar:/var/lib/neo4j/system/lib/jersey-multipart-1.9.jar:/var/lib/neo4j/system/lib/jersey-server-1.9.jar:/var/lib/neo4j/system/lib/jetty-http-9.0.5.v20130815.jar:/var/lib/neo4j/system/lib/jetty-io-9.0.5.v20130815.jar:/var/lib/neo4j/system/lib/jetty-security-9.0.5.v20130815.jar:/var/lib/neo4j/system/lib/jetty-server-9.0.5.v20130815.jar:/var/lib/neo4j/system/lib/jetty-servlet-9.0.5.v20130815.jar:/var/lib/neo4j/system/lib/jetty-util-9.0.5.v20130815.jar:/var/lib/neo4j/system/lib/jetty-webapp-9.0.5.v20130815.jar:/var/lib/neo4j/system/lib/jetty-xml-9.0.5.v20130815.jar:/var/lib/neo4j/system/lib/jsr311-api-1.1.2.r612.jar:/var/lib/neo4j/system/lib/logback-access-1.0.9.jar:/var/lib/neo4j/system/lib/logback-classic-1.0.9.jar:/var/lib/neo4j/system/lib/logback-core-1.0.9.jar:/var/lib/neo4j/system/lib/mimepull-1.6.jar:/var/lib/neo4j/system/lib/neo4j-browser-2.0.0.jar:/var/lib/neo4j/system/lib/neo4j-server-2.0.0-static-web.jar:/var/lib/neo4j/system/lib/neo4j-server-2.0.0.jar:/var/lib/neo4j/system/lib/rhino-1.7R3.jar:/var/lib/neo4j/system/lib/rrd4j-2.0.7.jar:/var/lib/neo4j/system/lib/slf4j-api-1.6.2.jar:/var/lib/neo4j/conf/ -server -XX:+DisableExplicitGC -Dorg.neo4j.server.properties=conf/neo4j-server.properties -Djava.util.logging.config.file=conf/logging.properties -Dlog4j.configuration=file:conf/log4j.properties -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled -Dneo4j.home=/var/lib/neo4j -Dneo4j.instance=/var/lib/neo4j -Dfile.encoding=UTF-8 org.neo4j.server.Bootstrapper root 3238 2056 0 17:49 pts/0 00:00:00 grep --color=auto 3161 ``` So I think that maybe starting the service as root is the issue, so I shut it down and start it up as the neo4j user. ``` root@precise64:~# service neo4j-service stop root@precise64:~# su - neo4j neo4j@precise64:~$ service neo4j-service start Using additional JVM arguments: -server -XX:+DisableExplicitGC - Dorg.neo4j.server.properties=conf/neo4j-server.properties -Djava.util.logging.config.file=conf/logging.properties -Dlog4j.configuration=file:conf/log4j.properties -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled Starting Neo4j Server...WARNING: not changing user process [3435]... waiting for server to be ready....... OK. http://localhost:7474/ is ready. cp: cannot create regular file `/var/run/neo4j.pid': Permission denied ``` And it fails because the pid file cannot be created. Which I assume means this is not the correct approach, but I go ahead and edit `/etc/init.d/neo4j-service` to change the location of the pid file to the home folder of the neo4j user: ``` #PIDFILE=/var/run/$NAME.pid PIDFILE=/var/lib/neo4j/$Name.pid ``` And then things startup without error when I run the service as the Neo4j user. So, my question is: What is the intended behavior? Should starting the service as root work as long as the neo4j user has the correct ulimit permissions, or do I need to modify the startup script/permissions to allow the neo4j user to create it's PID file?