"Non-zero exit status" error downloading XML and RCurl R packages
installation, package, r, rcurl, xml
Solution
Running over CentOS 6.4, I had just successfully follow the steps:
- Install curl-devel and libxml with the Linux command line:
$ sudo yum install curl curl-devel
$ sudo yum -y install libxml2 libxml2-devel
- On R console, restart the R session and install the RCurl and XML package:
>> install.packages("RCurl")
>> install.packages("XML")
- Load the libraries:
>> library(RCurl)
>> library(XML)
Hope this save you a day!
Problem
I'm having this problem: ``` > install.packages("RCurl") Installing package(s) into ‘/home/username/R/x86_64-redhat-linux-gnu-library/2.13’ (as ‘lib’ is unspecified) trying URL 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/RCurl_1.95-3.tar.gz' Content type 'application/x-gzip' length 868491 bytes (848 Kb) opened URL ================================================== downloaded 848 Kb * installing *source* package ‘RCurl’ ... checking for curl-config... no Cannot find curl-config ERROR: configuration failed for package ‘RCurl’ * removing ‘/home/username/R/x86_64-redhat-linux-gnu-library/2.13/RCurl’ Warning in install.packages : installation of package 'RCurl' had non-zero exit status The downloaded packages are in ‘/tmp/RtmpKyAgF8/downloaded_packages’ ``` AND: ``` > install.packages("XML") Installing package(s) into ‘/home/username/R/x86_64-redhat-linux-gnu-library/2.13’ (as ‘lib’ is unspecified) trying URL 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/XML_3.95-0.1.tar.gz' Content type 'application/x-gzip' length 1724282 bytes (1.6 Mb) opened URL ================================================== downloaded 1.6 Mb * installing *source* package ‘XML’ ... checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E No ability to remove finalizers on externalptr objects in this verison of R checking for sed... /bin/sed checking for pkg-config... /usr/bin/pkg-config checking for xml2-config... no Cannot find xml2-config ERROR: configuration failed for package ‘XML’ * removing ‘/home/username/R/x86_64-redhat-linux-gnu-library/2.13/XML’ Warning in install.packages : installation of package 'XML' had non-zero exit status The downloaded packages are in ‘/tmp/RtmpKyAgF8/downloaded_packages’ ```