user-menu in secondary-menu: why?
drupal, drupal-blocks, drupal-regions, drupal-zen
Solution
I can't comment on your specific template files but the standard Zen page.tpl.php file has this in it:
<?php if ($secondary_menu): ?>
<nav id="secondary-menu" role="navigation">
<?php print theme('links__system_secondary_menu', array(
'links' => $secondary_menu,
'attributes' => array(
'class' => array('links', 'inline', 'clearfix'),
),
'heading' => array(
'text' => $secondary_menu_heading,
'level' => 'h2',
'class' => array('element-invisible'),
),
)); ?>
</nav>
<?php endif; ?>
Which should answer how the menu gets printed to the page. If you want to dig one step deeper, the `$secondary_menu` variable is set up in `template_preprocess_page()`.
As to why it's the user menu...if you go to `admin/structure/menu/settings` you should see this:
If you change the secondary link source to something else you should see that reflected in your theme too.
Problem
I've created a sub of the zen-theme. And am mighty proud of it, but up in the top right corner (#secondary-menu) the user-menu shows up - perfectly. I just don't understand how it get's there? - In structure/blocks the user-menu appears in the Disabled section (Region: None) - In fact, there IS no region called "secondary-menu" (id of the element gotten from Firebug) Isn't that strange?