read .yml files in matlab

file-io, matlab, yaml

Solution

It's YAML file indeed (as @DavidBrown mentioned in his comment, the extension does not matter). But it has some problems. Don't know if it's due to wrong YAML format or MATLAB implementation.

I've installed YAMLMATLAB and played a little with your file.

YamlStruct = ReadYaml(yaml_file);

YAMLMATLAB returns error if the files is feed as is. It works only if I comment the first line and remove spaces from field names. So the beginning of the file looks like this:

#YAML:1.0
Imagefile: 00032009.jpg
Contourscount: 8
...skipped the rest...

Then I get the correct structure. For example you can access the 1st point's `x` coordinate as

YamlStruct.Contours{1}.Points{1}.x

ans =

  682.5947

UPDATE

Space in filed names is actually a known problem in YAMLMATLAB. See the report and possible solution here.

UPDATE 2

According to comment from @Jirka_cigler (YAMLMATLAB developers group):

In the program release 0.4.3 we added support for whitespaces in field names, so the problem should not appear again.

Great!

I've also removed previous developers comment on the problem in the first UPDATE since it's not true any more.

Problem

I would like to read .yml files in Matlab. These files contain coordinates x and y of key points on a face image. I looked for different tools but I don't seem to find any answers. My .yml files look like this ``` YAML:1.0 Image file: "00032009.jpg" Contours count: 8 Contours: - Name: FO Count: 41 Closed: 0 Points: - x: 682.5947265625000000 y: 743.1998901367187500 - x: 685.9638061523437500 y: 771.3800659179687500 ``` ...... and so on Note 00032009.jpg is an image of a face x and y are coordinates of a point on a face Eg: the right corner of an eye etc Could you please point out a way to read the file and then display the points on the face image? Edit 1: Here is the error I get ``` Error: File: ReadYamlRaw.m Line: 14 Column: 11 Expression or statement is incorrect--possibly unbalanced (, {, or [. Error in ==> ReadYaml at 38 ry = ReadYamlRaw(filename, 0, nosuchfileaction); ``` What is weird is line 14 in ReadYamlRaw.m ``` [pth,~,~]= fileparts(mfilename('fullpath')); Parse error at ','(second one) and ']' usage appears to be invalid matlab syntax. ``` So what is the use of ~ in there and why is there an error? Edit2: I replaced the ~ in the line above with dummy variables then I get this errors O_O ``` Error using ==> ReadYamlRaw>scan at 81 Unknown data type: logical Error in ==> ReadYamlRaw>scan_map at 138 result.(ich) = scan(r.get(java.lang.String(ich))); Error in ==> ReadYamlRaw>scan at 79 result = scan_map(r); Error in ==> ReadYamlRaw>scan_list at 116 result{ii} = scan(i); Error in ==> ReadYamlRaw>scan at 77 result = scan_list(r); Error in ==> ReadYamlRaw>scan_map at 138 result.(ich) = scan(r.get(java.lang.String(ich))); Error in ==> ReadYamlRaw>scan at 79 result = scan_map(r); Error in ==> ReadYamlRaw>load_yaml at 48 result = scan(yaml.load(fileread([filename, fileext]))); Error in ==> ReadYamlRaw at 19 result = load_yaml(filename, nosuchfileaction); Error in ==> ReadYaml at 38 ry = ReadYamlRaw(filename, 0, nosuchfileaction); ``` I also tried with a different yml file that looks like this ``` %YAML:1.0 RE-C: x: 919 y: 580 LE-C: x: 1209 y: 597 N-C: x: 1063 y: 698 FO-B: x: 1045 y: 1114 REL-O: x: 852 y: 597 REL-I: x: 986 y: 600 REL-T: x: 918 y: 564 ``` And I get the following errors ``` Java exception occurred: while scanning a directive in "<string>", line 1, column 1: %YAML:1.0 ^ expected alphabetic or numeric character, but found :(58) in "<string>", line 1, column 6: %YAML:1.0 ^ at org.yaml.snakeyaml.scanner.ScannerImpl.scanDirectiveName(ScannerImpl.java:1028) at org.yaml.snakeyaml.scanner.ScannerImpl.scanDirective(ScannerImpl.java:990) at org.yaml.snakeyaml.scanner.ScannerImpl.fetchDirective(ScannerImpl.java:534) at org.yaml.snakeyaml.scanner.ScannerImpl.fetchMoreTokens(ScannerImpl.java:251) at org.yaml.snakeyaml.scanner.ScannerImpl.checkToken(ScannerImpl.java:179) at org.yaml.snakeyaml.parser.ParserImpl$ParseImplicitDocumentStart.produce(ParserImpl.java:198) at org.yaml.snakeyaml.parser.ParserImpl.peekEvent(ParserImpl.java:161) at org.yaml.snakeyaml.parser.ParserImpl.checkEvent(ParserImpl.java:146) at org.yaml.snakeyaml.composer.Composer.getSingleNode(Composer.java:105) at org.yaml.snakeyaml.constructor.BaseConstructor.getSingleData(BaseConstructor.java:121) at org.yaml.snakeyaml.Yaml.loadFromReader(Yaml.java:480) at org.yaml.snakeyaml.Yaml.load(Yaml.java:399) Error in ==> ReadYamlRaw>load_yaml at 48 result = scan(yaml.load(fileread([filename, fileext]))); Error in ==> ReadYamlRaw at 19 result = load_yaml(filename, nosuchfileaction); Error in ==> ReadYaml at 38 ry = ReadYamlRaw(filename, 0, nosuchfileaction); ``` Maybe someone can make something out of these or you could point out another set of functions that would work? I searched but didn't find any except this one.

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